Transcript: ENST00000357250.6 COL9A1-001

Description

collagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:2217]

Gene Synonyms

DJ149L1.1.2, EDM6, MED, STL4

Location

Chromosome 6: 70,924,764-71,012,786 reverse strand.

About this transcript

This transcript has 38 exons, is annotated with 26 domains and features, is associated with 39255 variant alleles and maps to 972 oligo probes.

Gene

This transcript is a product of gene ENSG00000112280.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000357250.6	COL9A1-001	4761	921aa	ENSP00000349790.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4971	P20849	NM_001851.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000320755.7	COL9A1-002	3059	678aa	ENSP00000315252.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47447	P20849	NM_078485.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370499.4	COL9A1-201	2893	678aa	ENSP00000359530.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NEQ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370496.3	COL9A1-004	1372	328aa	ENSP00000359527.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P20849	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489611.1	COL9A1-009	1940	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486080.1	COL9A1-008	1844	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000360859.6	COL9A1-010	699	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000447041.2	COL9A1-007	690	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493682.2	COL9A1-005	1117	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470652.1	COL9A1-003	531	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000489861.2	COL9A1-006	243	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 38, Transcript length: 4,761 bps, Translation length: 921 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P20849

CCDS

This transcript is a member of the Human CCDS set: CCDS4971

Version

ENST00000357250.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041131 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000357250.6 COL9A1-001

Summary