Transcript: ENST00000370651.3 PTP4A1-004

Description

protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]

Gene Synonyms

HH72, PRL-1, PRL1, PTP(CAAX1), PTPCAAX1

Location

About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 5739 variant alleles and maps to 831 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000370651.3	PTP4A1-004	5088	173aa	ENSP00000359685.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4965	Q93096	NM_003463.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370650.2	PTP4A1-201	3294	148aa	ENSP00000359684.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5TCM7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578299.1	PTP4A1-005	135	44aa	ENSP00000462406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSB4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473334.1	PTP4A1-003	638	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470661.1	PTP4A1-002	479	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 5,088 bps, Translation length: 173 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q93096

CCDS

This transcript is a member of the Human CCDS set: CCDS4965

Version

ENST00000370651.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000041083 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.