Transcript: ENST00000392542.2 RFC5-001

Description

replication factor C (activator 1) 5, 36.5kDa [Source:HGNC Symbol;Acc:9973]

Gene Synonyms

RFC36

Location

Chromosome 12: 118,454,527-118,470,032 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 6620 variant alleles and maps to 691 oligo probes.

Gene

This transcript is a product of gene ENSG00000111445.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392542.2	RFC5-001	2442	319aa	ENSP00000376325.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41843	C9JH72 E9PEP3 F5H304 F5H5S0 F8W9B4 P40937	NM_181578.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000229043.3	RFC5-201	2229	255aa	ENSP00000229043.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEP3 F5H5S0 F8W9B4	NM_001130112.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454402.2	RFC5-002	1655	340aa	ENSP00000408295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9185	E9PEP3 F5H5S0 F8W9B4 P40937	NM_007370.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537315.1	RFC5-003	820	104aa	ENSP00000443187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEP3 F5H5S0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000484086.2	RFC5-007	631	139aa	ENSP00000445917.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0U6 F5H304	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535092.1	RFC5-008	574	63aa	ENSP00000438252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H304	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000449641.2	RFC5-006	572	99aa	ENSP00000393636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEP3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420967.1	RFC5-004	559	104aa	ENSP00000390340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH72 F5H304	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000543153.1	RFC5-009	1061	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472603.1	RFC5-005	681	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 2,442 bps, Translation length: 319 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P40937

CCDS

This transcript is a member of the Human CCDS set: CCDS41843

Version

ENST00000392542.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000344195 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000392542.2 RFC5-001

Summary