Transcript: ENST00000533910.1 CHKA-005

Description

choline kinase alpha [Source:HGNC Symbol;Acc:1937]

Gene Synonyms

CHK, CK, CKI, EK

Location

Chromosome 11: 67,833,939-67,849,277 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 6415 variant alleles and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSG00000110721.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000265689.4	CHKA-001	2530	457aa	ENSP00000265689.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8178	E9PM06 P35790	NM_001277.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356135.5	CHKA-002	1755	439aa	ENSP00000348454.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8179	P35790	NM_212469.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000531341.1	CHKA-006	524	156aa	ENSP00000435032.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PM06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000525155.1	CHKA-007	1201	164aa	ENSP00000432631.1	Nonsense mediated decay		H0YD02	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533728.1	CHKA-008	662	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530730.1	CHKA-003	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528235.1	CHKA-004	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000533910.1	CHKA-005	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 864 bps,

Version

ENST00000533910.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000394573 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000533910.1 CHKA-005

Summary