Transcript: ENST00000521779.1 HOXA3-007

Description

homeobox A3 [Source:HGNC Symbol;Acc:5104]

Gene Synonyms

HOX1, HOX1E

Location

Chromosome 7: 27,150,223-27,179,838 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 14323 variant alleles and maps to 206 oligo probes.

Gene

This transcript is a product of gene ENSG00000105997.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396352.4	HOXA3-001	3263	443aa	ENSP00000379640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5404	A4D182 E5RIJ8 F2Z3A4 O43365	NM_030661.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000317201.2	HOXA3-002	2574	443aa	ENSP00000324884.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5404	A4D182 E5RIJ8 F2Z3A4 O43365	NM_153631.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522788.1	HOXA3-005	581	84aa	ENSP00000429426.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIJ8 F2Z3A4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521779.1	HOXA3-007	563	12aa	ENSP00000430111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522456.1	HOXA3-004	503	54aa	ENSP00000430566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z3A4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521401.1	HOXA3-006	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518451.1	HOXA3-008	541	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 1, Transcript length: 563 bps, Translation length: 12 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000521779.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000358709 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000521779.1 HOXA3-007

Summary