Transcript: ENST00000317201.2 HOXA3-002

Description

homeobox A3 [Source:HGNC Symbol;Acc:5104]

Gene Synonyms

HOX1, HOX1E

Location

Chromosome 7: 27,146,631-27,166,639 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 24 domains and features, is associated with 10324 variant alleles and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000105997.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000396352.4	HOXA3-001	3263	443aa	ENSP00000379640.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5404	A4D182 E5RIJ8 F2Z3A4 O43365	NM_030661.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000317201.2	HOXA3-002	2574	443aa	ENSP00000324884.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5404	A4D182 E5RIJ8 F2Z3A4 O43365	NM_153631.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522788.1	HOXA3-005	581	84aa	ENSP00000429426.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RIJ8 F2Z3A4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521779.1	HOXA3-007	563	12aa	ENSP00000430111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000522456.1	HOXA3-004	503	54aa	ENSP00000430566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F2Z3A4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000521401.1	HOXA3-006	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000518451.1	HOXA3-008	541	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 2,574 bps, Translation length: 443 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O43365

CCDS

This transcript is a member of the Human CCDS set: CCDS5404

Version

ENST00000317201.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000134388 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000317201.2 HOXA3-002

Summary