Transcript: ENST00000399138.4 ALKBH5-001

Description

alkB, alkylation repair homolog 5 (E. coli) [Source:HGNC Symbol;Acc:25996]

Gene Synonyms

ABH5, FLJ20308, OFOXD, OFOXD1

Location

About this transcript

This transcript has 4 exons, is annotated with 6 domains and features, is associated with 12877 variant alleles and maps to 351 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399138.4	ALKBH5-001	2748	394aa	ENSP00000382091.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42272	K7ER58 Q6P6C2	NM_017758.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541285.1	ALKBH5-003	1605	53aa	ENSP00000468116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ER58	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000490106.1	ALKBH5-002	2146	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,748 bps, Translation length: 394 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6P6C2

CCDS

This transcript is a member of the Human CCDS set: CCDS42272

Version

ENST00000399138.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000132069 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.