Transcript: ENST00000570360.1 ITGAE-004

Description

integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) [Source:HGNC Symbol;Acc:6147]

Gene Synonyms

CD103, HUMINAE

Location

Chromosome 17: 3,617,986-3,627,148 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 4489 variant alleles and maps to 324 oligo probes.

Gene

This transcript is a product of gene ENSG00000083457.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263087.4	ITGAE-001	3858	1179aa	ENSP00000263087.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32531	P38570	NM_002208.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574026.2	ITGAE-006	416	139aa	ENSP00000467977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000571185.1	ITGAE-005	1004	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570360.1	ITGAE-004	721	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572179.1	ITGAE-002	672	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572121.1	ITGAE-008	354	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571937.1	ITGAE-003	1982	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570415.1	ITGAE-009	1115	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572433.1	ITGAE-007	731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 721 bps,

Version

ENST00000570360.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000438173 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000570360.1 ITGAE-004

Summary