Transcript: ENST00000263087.4 ITGAE-001

Description

integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) [Source:HGNC Symbol;Acc:6147]

Gene Synonyms

CD103, HUMINAE

Location

Chromosome 17: 3,617,922-3,704,537 reverse strand.

About this transcript

This transcript has 31 exons, is annotated with 44 domains and features, is associated with 44718 variant alleles and maps to 881 oligo probes.

Gene

This transcript is a product of gene ENSG00000083457.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000263087.4	ITGAE-001	3858	1179aa	ENSP00000263087.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32531	P38570	NM_002208.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000574026.2	ITGAE-006	416	139aa	ENSP00000467977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000571185.1	ITGAE-005	1004	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000570360.1	ITGAE-004	721	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572179.1	ITGAE-002	672	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000572121.1	ITGAE-008	354	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571937.1	ITGAE-003	1982	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570415.1	ITGAE-009	1115	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000572433.1	ITGAE-007	731	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 31, Transcript length: 3,858 bps, Translation length: 1,179 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P38570

CCDS

This transcript is a member of the Human CCDS set: CCDS32531

Version

ENST00000263087.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000438169 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000263087.4 ITGAE-001

Summary