Transcript: ENST00000262188.8 SMARCD3-002

Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 [Source:HGNC Symbol;Acc:11108]

Gene Synonyms

BAF60C, CRACD3, Rsc6p

Location

Chromosome 7: 150,936,059-150,946,059 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 10 domains and features, is associated with 4779 variant alleles and maps to 538 oligo probes.

Gene

This transcript is a product of gene ENSG00000082014.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000392811.2	SMARCD3-001	2018	470aa	ENSP00000376558.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5924	C9JYI7 Q6STE5	NM_003078.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000262188.8	SMARCD3-002	1993	483aa	ENSP00000262188.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34780	Q6STE5	NM_001003801.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356800.2	SMARCD3-201	1669	470aa	ENSP00000349254.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5924	C9JYI7 Q6STE5	NM_001003802.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000491651.1	SMARCD3-008	613	139aa	ENSP00000419886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYI7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000469154.1	SMARCD3-004	2415	73aa	ENSP00000417908.1	Nonsense mediated decay		F8WBJ3	-	-
ENST00000485592.1	SMARCD3-011	820	68aa	ENSP00000417145.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000477169.1	SMARCD3-009	802	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460431.1	SMARCD3-010	673	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496530.1	SMARCD3-015	468	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489503.1	SMARCD3-013	378	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470588.1	SMARCD3-007	1755	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472988.1	SMARCD3-005	1654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000485610.1	SMARCD3-006	1480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472789.1	SMARCD3-014	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472103.1	SMARCD3-012	798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,993 bps, Translation length: 483 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6STE5

CCDS

This transcript is a member of the Human CCDS set: CCDS34780

Version

ENST00000262188.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000348825 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000262188.8 SMARCD3-002

Summary