Transcript: ENST00000543185.1 HDAC4-202

Description

histone deacetylase 4 [Source:HGNC Symbol;Acc:14063]

Gene Synonyms

AHO3, BDMR, HA6116, HD4, HDAC-4, HDAC-A, HDACA, KIAA0288

Location

Chromosome 2: 239,974,703-240,077,271 reverse strand.

About this transcript

This transcript has 21 exons, is annotated with 13 domains and features, is associated with 53331 variant alleles and maps to 468 oligo probes.

Gene

This transcript is a product of gene ENSG00000068024.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000345617.3	HDAC4-001	8976	1084aa	ENSP00000264606.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2529	C9J0X4 F5GX36 F5H0B1 P56524 Q53SB4 Q53SM2	NM_006037.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541256.1	HDAC4-201	2775	737aa	ENSP00000443057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J481 F5H5W4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543185.1	HDAC4-202	2707	668aa	ENSP00000440481.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GX36	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430200.1	HDAC4-013	578	175aa	ENSP00000410551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000454542.1	HDAC4-008	565	162aa	ENSP00000405226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J481	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000446876.1	HDAC4-007	554	123aa	ENSP00000392912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J0X4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445704.1	HDAC4-009	445	148aa	ENSP00000391226.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000544989.1	HDAC4-015	342	29aa	ENSP00000438111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0B1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000553145.1	HDAC4-018	552	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494800.1	HDAC4-012	451	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493582.1	HDAC4-002	3188	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000463007.1	HDAC4-004	3158	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535493.1	HDAC4-016	2743	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000461113.1	HDAC4-006	1019	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496347.1	HDAC4-005	995	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000495497.1	HDAC4-010	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000487617.1	HDAC4-014	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460235.1	HDAC4-011	343	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 21, Coding exons: 17, Transcript length: 2,707 bps, Translation length: 668 residues

Version

ENST00000543185.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000543185.1 HDAC4-202

Summary