Description
histone deacetylase 4 [Source:HGNC Symbol;Acc:14063]
Gene Synonyms
AHO3, BDMR, HA6116, HD4, HDAC-4, HDAC-A, HDACA, KIAA0288
Location
Chromosome 2: 239,969,864-240,323,348 reverse strand.
GRCh37:CM000664.1
About this gene
This gene has 18 transcripts (splice variants), 5 paralogues and is associated with 5 phenotypes.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000345617.3 | HDAC4-001 | 8976 | 1084aa | ENSP00000264606.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS2529 | C9J0X4 F5GX36 F5H0B1 P56524 Q53SB4 Q53SM2 | NM_006037.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, |
| ENST00000541256.1 | HDAC4-201 | 2775 | 737aa | ENSP00000443057.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J481 F5H5W4 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000543185.1 | HDAC4-202 | 2707 | 668aa | ENSP00000440481.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5GX36 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000430200.1 | HDAC4-013 | 578 | 175aa | ENSP00000410551.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, | |
| ENST00000454542.1 | HDAC4-008 | 565 | 162aa | ENSP00000405226.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J481 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000446876.1 | HDAC4-007 | 554 | 123aa | ENSP00000392912.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | C9J0X4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000445704.1 | HDAC4-009 | 445 | 148aa | ENSP00000391226.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, | |
| ENST00000544989.1 | HDAC4-015 | 342 | 29aa | ENSP00000438111.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F5H0B1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000553145.1 | HDAC4-018 | 552 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000494800.1 | HDAC4-012 | 451 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | |
| ENST00000493582.1 | HDAC4-002 | 3188 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000463007.1 | HDAC4-004 | 3158 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000535493.1 | HDAC4-016 | 2743 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000461113.1 | HDAC4-006 | 1019 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000496347.1 | HDAC4-005 | 995 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000495497.1 | HDAC4-010 | 849 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000487617.1 | HDAC4-014 | 819 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000460235.1 | HDAC4-011 | 343 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
