Transcript: ENST00000582481.1 SNX11-011

Description

sorting nexin 11 [Source:HGNC Symbol;Acc:14975]

Location

Chromosome 17: 46,189,311-46,196,541 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 8 domains and features, is associated with 3309 variant alleles and maps to 112 oligo probes.

Gene

This transcript is a product of gene ENSG00000002919.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393405.2	SNX11-001	2733	270aa	ENSP00000377059.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11526	B4DJI7 J3KTN6 J3QLV8 J3QRB9 Q9Y5W9	NM_152244.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359238.2	SNX11-003	2315	270aa	ENSP00000352175.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11526	B4DJI7 J3KTN6 J3QLV8 J3QRB9 Q9Y5W9	NM_013323.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452859.2	SNX11-002	1601	126aa	ENSP00000396790.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439357.2	SNX11-201	1426	209aa	ENSP00000407369.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7 B4DKH7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582104.1	SNX11-006	1282	262aa	ENSP00000463948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7 B4DPY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580219.1	SNX11-004	1200	262aa	ENSP00000462188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7 B4DPY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584335.1	SNX11-010	922	254aa	ENSP00000463726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTN6 J3QLV8 J3QRB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582481.1	SNX11-011	627	177aa	ENSP00000463076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTN6 J3QRB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581298.1	SNX11-014	563	172aa	ENSP00000464136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581705.1	SNX11-007	1426	46aa	ENSP00000464410.1	Nonsense mediated decay		J3QRW4	-	-
ENST00000583320.1	SNX11-013	965	57aa	ENSP00000463250.1	Nonsense mediated decay		J3QKV3	-	-
ENST00000578861.1	SNX11-008	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000580875.1	SNX11-009	704	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577310.1	SNX11-012	358	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 627 bps, Translation length: 177 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000582481.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000443430 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000582481.1 SNX11-011

Summary