Transcript: ENST00000452859.2 SNX11-002

Description

sorting nexin 11 [Source:HGNC Symbol;Acc:14975]

Location

Chromosome 17: 46,184,911-46,199,497 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 6538 variant alleles and maps to 336 oligo probes.

Gene

This transcript is a product of gene ENSG00000002919.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000393405.2	SNX11-001	2733	270aa	ENSP00000377059.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11526	B4DJI7 J3KTN6 J3QLV8 J3QRB9 Q9Y5W9	NM_152244.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000359238.2	SNX11-003	2315	270aa	ENSP00000352175.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11526	B4DJI7 J3KTN6 J3QLV8 J3QRB9 Q9Y5W9	NM_013323.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000452859.2	SNX11-002	1601	126aa	ENSP00000396790.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439357.2	SNX11-201	1426	209aa	ENSP00000407369.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7 B4DKH7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000582104.1	SNX11-006	1282	262aa	ENSP00000463948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7 B4DPY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000580219.1	SNX11-004	1200	262aa	ENSP00000462188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DJI7 B4DPY5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584335.1	SNX11-010	922	254aa	ENSP00000463726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTN6 J3QLV8 J3QRB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000582481.1	SNX11-011	627	177aa	ENSP00000463076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTN6 J3QRB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581298.1	SNX11-014	563	172aa	ENSP00000464136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRB9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000581705.1	SNX11-007	1426	46aa	ENSP00000464410.1	Nonsense mediated decay		J3QRW4	-	-
ENST00000583320.1	SNX11-013	965	57aa	ENSP00000463250.1	Nonsense mediated decay		J3QKV3	-	-
ENST00000578861.1	SNX11-008	571	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000580875.1	SNX11-009	704	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000577310.1	SNX11-012	358	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 1,601 bps, Translation length: 126 residues

Version

ENST00000452859.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000443421 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000452859.2 SNX11-002

Summary