Transcript: ENST00000492796.1 CDC42SE1-003

Description

CDC42 small effector 1 [Source:HGNC Symbol;Acc:17719]

Gene Synonyms

SCIP1, SPEC1

Location

Chromosome 1: 151,025,422-151,032,091 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 2773 variant alleles and maps to 421 oligo probes.

Gene

This transcript is a product of gene ENSG00000197622.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000439374.2	CDC42SE1-001	3498	79aa	ENSP00000475845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS981	Q9NRR8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540998.1	CDC42SE1-202	3181	79aa	ENSP00000445647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS981	Q9NRR8	NM_001038707.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000357235.5	CDC42SE1-201	3045	79aa	ENSP00000349773.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS981	Q9NRR8	NM_020239.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492796.1	CDC42SE1-003	1174	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470278.1	CDC42SE1-004	939	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491825.1	CDC42SE1-005	837	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483763.1	CDC42SE1-002	2379	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,174 bps,

Version

ENST00000492796.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000085098 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000492796.1 CDC42SE1-003

Summary