Transcript: ENST00000415100.1 NIPSNAP1-003

Description

nipsnap homolog 1 (C. elegans) [Source:HGNC Symbol;Acc:7827]

Location

Chromosome 22: 29,957,159-29,977,063 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 7 domains and features, is associated with 8608 variant alleles and maps to 226 oligo probes.

Gene

This transcript is a product of gene ENSG00000184117.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000216121.7	NIPSNAP1-001	2237	284aa	ENSP00000216121.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13860	C9JDV8 Q9BPW8	NM_003634.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000415100.1	NIPSNAP1-003	661	221aa	ENSP00000407851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDV8	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000437094.1	NIPSNAP1-002	654	69aa	ENSP00000403448.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JDV8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455496.1	NIPSNAP1-007	600	128aa	ENSP00000404227.1	Nonsense mediated decay		F8WCR5	-	-
ENST00000494966.1	NIPSNAP1-004	441	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496944.1	NIPSNAP1-005	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 661 bps, Translation length: 221 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000415100.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000322119 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000415100.1 NIPSNAP1-003

Summary