Transcript: ENST00000373157.4 COL6A5-004

Description

collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:26674]

Gene Synonyms

COL29A1, FLJ35880, VWA4

Location

Chromosome 3: 130,159,354-130,203,000 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 17904 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSG00000172752.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000265379.6	COL6A5-201	9226	2615aa	ENSP00000265379.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PAL5	NM_001278298.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000432398.2	COL6A5-202	8878	2526aa	ENSP00000390895.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W8G8	NM_153264.6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000512836.1	COL6A5-003	3138	778aa	ENSP00000422898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512482.1	COL6A5-002	1780	443aa	ENSP00000424968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y9T2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000373157.4	COL6A5-004	1770	557aa	ENSP00000362250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0Y393	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000312481.7	COL6A5-001	9226	2615aa	ENSP00000309762.7	Nonsense mediated decay	A8TX70	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,770 bps, Translation length: 557 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000373157.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000357221 (version 1)

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Transcript: ENST00000373157.4 COL6A5-004

Summary