Transcript: ENST00000462306.1 ERCC3-002

Description

excision repair cross-complementing rodent repair deficiency, complementation group 3 [Source:HGNC Symbol;Acc:3435]

Gene Synonyms

BTF2, GTF2H, RAD25, TFIIH, XPB, XPBC

Location

Chromosome 2: 128,047,272-128,051,713 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 2364 variant alleles and maps to 212 oligo probes.

Gene

This transcript is a product of gene ENSG00000163161.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000285398.2	ERCC3-001	2750	782aa	ENSP00000285398.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2144	G3V1S1 P19447	NM_000122.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493187.2	ERCC3-201	2920	718aa	ENSP00000444796.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3V1S1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456257.1	ERCC3-011	563	188aa	ENSP00000408901.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000445889.1	ERCC3-004	2920	71aa	ENSP00000390888.1	Nonsense mediated decay		F2Z2V4	-	-
ENST00000426778.1	ERCC3-005	2916	71aa	ENSP00000415335.1	Nonsense mediated decay		F2Z2V4	-	-
ENST00000491292.1	ERCC3-006	4018	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494464.1	ERCC3-003	1367	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000462306.1	ERCC3-002	963	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460485.1	ERCC3-010	815	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490062.1	ERCC3-007	576	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 963 bps,

Version

ENST00000462306.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331029 (version 1)

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Transcript: ENST00000462306.1 ERCC3-002

Summary