Transcript: ENST00000465960.2 CAPN13-005

Description

calpain 13 [Source:HGNC Symbol;Acc:16663]

Gene Synonyms

FLJ23523

Location

Chromosome 2: 30,980,912-31,043,408 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 30337 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSG00000162949.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000295055.8	CAPN13-001	2683	669aa	ENSP00000295055.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46252	Q6MZZ7	NM_144575.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534090.2	CAPN13-201	2677	669aa	ENSP00000431298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W7Z8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450650.1	CAPN13-003	2328	125aa	ENSP00000403180.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000458085.2	CAPN13-004	2269	423aa	ENSP00000416191.2	Nonsense mediated decay		Q6MZZ7	-	-
ENST00000485248.2	CAPN13-006	710	102aa	ENSP00000440723.1	Nonsense mediated decay		F5GYA7	-	-
ENST00000465960.2	CAPN13-005	1215	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000490786.1	CAPN13-008	506	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000465450.2	CAPN13-007	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,215 bps,

Version

ENST00000465960.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325265 (version 2)

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Transcript: ENST00000465960.2 CAPN13-005

Summary