Transcript: ENST00000489519.1 CACFD1-004

Description

calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:1365]

Gene Synonyms

C9orf7, D9S2135, FLOWER, flower

Location

Chromosome 9: 136,325,120-136,330,975 forward strand.

About this transcript

This transcript has 3 exons, is associated with 3369 variant alleles and maps to 160 oligo probes.

Gene

This transcript is a product of gene ENSG00000160325.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000540581.1	CACFD1-201	1033	233aa	ENSP00000440832.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56591	Q9UGQ2	NM_001242369.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000316948.4	CACFD1-001	2794	172aa	ENSP00000317121.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6974	Q9UGQ2	NM_017586.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000291722.7	CACFD1-002	2688	130aa	ENSP00000291722.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48051	Q9UGQ2	NM_001135775.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542192.1	CACFD1-202	1277	191aa	ENSP00000444328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56592	Q9UGQ2	NM_001242370.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000444798.1	CACFD1-005	356	114aa	ENSP00000414495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6TGH8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000489519.1	CACFD1-004	795	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474734.1	CACFD1-003	689	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 795 bps,

Version

ENST00000489519.1

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000054918 (version 1)

EMBL-EBI User Survey 2024

Favourite species

All species

Recent locations

Transcript: ENST00000489519.1 CACFD1-004

Summary