Transcript: ENST00000492580.1 ABCA9-007

Description

ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:39]

Gene Synonyms

EST640918

Location

Chromosome 17: 67,007,966-67,013,913 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2685 variant alleles and maps to 71 oligo probes.

Gene

This transcript is a product of gene ENSG00000154258.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000340001.4	ABCA9-001	6514	1624aa	ENSP00000342216.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11681	K7EJJ0 Q8IUA7	NM_080283.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370732.2	ABCA9-201	6205	1435aa	ENSP00000359767.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ0 Q8IUA7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453985.2	ABCA9-002	6116	1586aa	ENSP00000394264.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y4U7 K7EJJ0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495634.1	ABCA9-003	1428	267aa	ENSP00000465601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ0 Q8IUA7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585714.1	ABCA9-008	582	89aa	ENSP00000465191.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EJJ0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000482072.1	ABCA9-005	235	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461623.1	ABCA9-004	2172	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000460872.1	ABCA9-006	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492580.1	ABCA9-007	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 514 bps,

Version

ENST00000492580.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000277078 (version 1)

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Transcript: ENST00000492580.1 ABCA9-007

Summary