Transcript: ENST00000474090.1 NR1I2-004

Description

nuclear receptor subfamily 1, group I, member 2 [Source:HGNC Symbol;Acc:7968]

Gene Synonyms

BXR, NR1I2, ONR1, PAR, PAR1, PAR2, PARq, PRR, PXR, SAR, SXR

Location

Chromosome 3: 119,500,882-119,529,399 forward strand.

About this transcript

This transcript has 3 exons, is associated with 12741 variant alleles and maps to 110 oligo probes.

Gene

This transcript is a product of gene ENSG00000144852.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000337940.4	NR1I2-001	2743	473aa	ENSP00000336528.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2995	B3KVM5 F1D8P9 F1DAL3 J3KPQ3 O75469	NM_022002.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000393716.2	NR1I2-002	4417	434aa	ENSP00000377319.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43136	B3KVM5 J3KPQ3	NM_003889.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466380.1	NR1I2-003	4306	397aa	ENSP00000420297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54627	H0Y8E2	NM_033013.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493757.1	NR1I2-005	2709	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000474090.1	NR1I2-004	977	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 977 bps,

Version

ENST00000474090.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355129 (version 1)

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Transcript: ENST00000474090.1 NR1I2-004

Summary