Transcript: ENST00000567409.1 ITGAX-002

Description

integrin, alpha X (complement component 3 receptor 4 subunit) [Source:HGNC Symbol;Acc:6152]

Gene Synonyms

CD11C, SLEB6

Location

Chromosome 16: 31,366,509-31,369,183 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1416 variant alleles and maps to 158 oligo probes.

Gene

This transcript is a product of gene ENSG00000140678.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000268296.4	ITGAX-001	4703	1163aa	ENSP00000268296.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10711	B4DDX0 P20702	NM_000887.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562522.1	ITGAX-004	3990	1169aa	ENSP00000454623.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS67014	B4DDX0 H3BN02	NM_001286375.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000562918.1	ITGAX-003	980	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571644.1	ITGAX-005	4382	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000567409.1	ITGAX-002	1146	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564308.1	ITGAX-008	544	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562138.1	ITGAX-010	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,146 bps,

Version

ENST00000567409.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000432827 (version 1)

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Transcript: ENST00000567409.1 ITGAX-002

Summary