Transcript: ENST00000533847.1 GIF-004

Description

gastric intrinsic factor (vitamin B synthesis) [Source:HGNC Symbol;Acc:4268]

Gene Synonyms

IF, IFMH, INF, TCN3

Location

Chromosome 11: 59,603,261-59,608,794 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2191 variant alleles and maps to 106 oligo probes.

Gene

This transcript is a product of gene ENSG00000134812.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000257248.2	GIF-001	1518	417aa	ENSP00000257248.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7977	P27352	NM_005142.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541311.1	GIF-201	1623	392aa	ENSP00000440427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P27352	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000525058.1	GIF-003	1623	48aa	ENSP00000433196.1	Nonsense mediated decay		E9PM21	-	-
ENST00000532070.1	GIF-002	977	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533847.1	GIF-004	745	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000533067.1	GIF-005	386	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 745 bps,

Version

ENST00000533847.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000394500 (version 1)

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Transcript: ENST00000533847.1 GIF-004

Summary