Transcript: ENST00000464240.1 LAMTOR5-002

Description

late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:HGNC Symbol;Acc:17955]

Gene Synonyms

HBXIP, MGC71071, XIP

Location

Chromosome 1: 110,943,871-110,950,316 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 2887 variant alleles and maps to 360 oligo probes.

Gene

This transcript is a product of gene ENSG00000134248.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000256644.4	LAMTOR5-001	868	173aa	ENSP00000256644.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS824	O43504 R4GMU8	NM_006402.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000474861.2	LAMTOR5-003	1154	90aa	ENSP00000434828.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLX3 R4GMU8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000483260.1	LAMTOR5-004	694	90aa	ENSP00000435085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PLX3 R4GMU8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602318.1	LAMTOR5-007	634	91aa	ENSP00000473439.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O43504 R4GMU8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000602858.1	LAMTOR5-008	553	79aa	ENSP00000473357.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		R4GMU8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464240.1	LAMTOR5-002	1830	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531779.1	LAMTOR5-006	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,830 bps,

Version

ENST00000464240.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000031967 (version 2)

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Transcript: ENST00000464240.1 LAMTOR5-002

Summary