Transcript: ENST00000541366.1 COPA-003

Description

coatomer protein complex, subunit alpha [Source:HGNC Symbol;Acc:2230]

Gene Synonyms

HEP-COP

Location

Chromosome 1: 160,303,252-160,313,049 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 3942 variant alleles and maps to 222 oligo probes.

Gene

This transcript is a product of gene ENSG00000122218.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000368069.3	COPA-001	4664	1233aa	ENSP00000357048.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41424	P53621	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000241704.7	COPA-002	4789	1224aa	ENSP00000241704.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1202	P53621	NM_004371.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545284.1	COPA-004	879	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541366.1	COPA-003	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481522.1	COPA-007	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481040.1	COPA-006	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545266.1	COPA-005	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 616 bps,

Version

ENST00000541366.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000080639 (version 1)

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Transcript: ENST00000541366.1 COPA-003

Summary