Transcript: ENST00000541366.1 COPA-003

Description

coatomer protein complex, subunit alpha [Source:HGNC Symbol;Acc:2230]

Gene Synonyms

HEP-COP

Location

Chromosome 1: 160,303,252-160,313,049 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 3942 variant alleles and maps to 222 oligo probes.

Gene

This transcript is a product of gene ENSG00000122218.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000241704.7	COPA-002	4789	1224aa	ENSP00000241704.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1202	P53621	NM_004371.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368069.3	COPA-001	4664	1233aa	ENSP00000357048.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41424	P53621	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000545284.1	COPA-004	879	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000541366.1	COPA-003	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481522.1	COPA-007	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000481040.1	COPA-006	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000545266.1	COPA-005	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 616 bps,

Version

ENST00000541366.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000080639 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000541366.1 COPA-003

Summary