Transcript: ENST00000489160.1 CCL20-002

Description

chemokine (C-C motif) ligand 20 [Source:HGNC Symbol;Acc:10619]

Gene Synonyms

CKb4, LARC, MIP-3-alpha, MIP-3a, MIP3A, SCYA20, ST38, exodus-1

Location

About this transcript

This transcript has 2 exons, is associated with 945 variant alleles and maps to 141 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358813.4	CCL20-004	800	96aa	ENSP00000351671.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2469	P78556	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409189.3	CCL20-001	831	95aa	ENSP00000386273.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46536	P78556	NM_004591.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473642.1	CCL20-003	680	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489160.1	CCL20-002	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 673 bps,

Version

ENST00000489160.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000331639 (version 1)