Transcript: ENST00000531140.1 SC5D-005

Description

sterol-C5-desaturase [Source:HGNC Symbol;Acc:10547]

Gene Synonyms

ERG3, S5DES, SC5DL

Location

Chromosome 11: 121,163,468-121,177,450 forward strand.

About this transcript

This transcript has 4 exons, is associated with 5695 variant alleles and maps to 215 oligo probes.

Gene

This transcript is a product of gene ENSG00000109929.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264027.4	SC5D-001	2456	299aa	ENSP00000264027.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8435	O75845 Q6GTM5	NM_006918.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392789.2	SC5D-002	2258	299aa	ENSP00000376539.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8435	O75845 Q6GTM5	NM_001024956.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534230.1	SC5D-004	1861	228aa	ENSP00000432550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQ91	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527762.1	SC5D-007	589	177aa	ENSP00000436290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528991.1	SC5D-008	346	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524683.1	SC5D-003	2391	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527183.1	SC5D-009	1524	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534455.1	SC5D-006	921	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531140.1	SC5D-005	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 767 bps,

Version

ENST00000531140.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000387698 (version 1)

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Transcript: ENST00000531140.1 SC5D-005

Summary