Transcript: ENST00000392789.2 SC5D-002

Description

sterol-C5-desaturase [Source:HGNC Symbol;Acc:10547]

Gene Synonyms

ERG3, S5DES, SC5DL

Location

Chromosome 11: 121,163,561-121,179,342 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 6450 variant alleles and maps to 427 oligo probes.

Gene

This transcript is a product of gene ENSG00000109929.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000264027.4	SC5D-001	2456	299aa	ENSP00000264027.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8435	O75845 Q6GTM5	NM_006918.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392789.2	SC5D-002	2258	299aa	ENSP00000376539.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8435	O75845 Q6GTM5	NM_001024956.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000534230.1	SC5D-004	1861	228aa	ENSP00000432550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQ91	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000527762.1	SC5D-007	589	177aa	ENSP00000436290.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PPW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000528991.1	SC5D-008	346	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000524683.1	SC5D-003	2391	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527183.1	SC5D-009	1524	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000534455.1	SC5D-006	921	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000531140.1	SC5D-005	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 2,258 bps, Translation length: 299 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75845

CCDS

This transcript is a member of the Human CCDS set: CCDS8435

Version

ENST00000392789.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000387702 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000392789.2 SC5D-002

Summary