Gene: CX3CR1 ENSG00000168329

Description

chemokine (C-X3-C motif) receptor 1 [Source:HGNC Symbol;Acc:2558]

Gene Synonyms

CCRL1, CMKBRL1, CMKDR1, GPR13, GPRV28, V28

Location

Chromosome 3: 39,304,985-39,323,226 reverse strand.

GRCh37:CM000665.1

About this gene

This gene has 6 transcripts (splice variants), 20 paralogues and is associated with 3 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358309.3	CX3CR1-201	3151	387aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54571	C9JLM2 C9JN40 P49238	NM_001171174.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000541347.1	CX3CR1-202	3255	355aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43069	C9JLM2 C9JN40 P49238	NM_001171171.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000542107.1	CX3CR1-203	3215	355aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43069	C9JLM2 C9JN40 P49238	NM_001171172.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000399220.2	CX3CR1-001	3106	355aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43069	C9JLM2 C9JN40 P49238	NM_001337.3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000435290.1	CX3CR1-003	699	166aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLM2 C9JN40	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000412814.1	CX3CR1-004	559	106aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JLM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Name

CX3CR1 (HGNC Symbol)

UniProtKB

This gene has proteins that correspond to the following UniProtKB identifiers: P49238

CCDS

This gene is a member of the Human CCDS set: CCDS43069.1, CCDS54571.1

Ensembl version

ENSG00000168329.9

Other assemblies

This gene maps to 39,263,494-39,281,735 in GRCh38 coordinates.

Gene type

Protein coding

Annotation method

Annotation for this gene includes both automatic annotation from Ensembl and Havana manual curation, see article.

Alternative genes

This gene corresponds to the following database identifiers:

Havana gene:	OTTHUMG00000156249 (version 1)

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Gene: CX3CR1 ENSG00000168329

Summary