Description
serine hydroxymethyltransferase 1 (soluble) [Source:HGNC Symbol;Acc:10850]
Gene Synonyms
CSHMT, MGC15229, MGC24556, SHMT, hsa-mir-6778
Location
Chromosome 17: 18,231,187-18,266,856 reverse strand.
GRCh37:CM000679.1
About this gene
This gene has 11 transcripts (splice variants) and 1 paralogue.
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000316694.3 | SHMT1-001 | 2464 | 483aa | ENSP00000318868.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11196 | B4DPM9 J3KRZ5 P34896 Q9UMC9 | NM_004169.3 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000352886.6 | SHMT1-201 | 2136 | 403aa | ENSP00000345881.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRZ5 P34896 Q9UMC9 | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000539052.1 | SHMT1-202 | 1759 | 345aa | ENSP00000440089.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS62112 | B4DPM9 Q9UMC9 | NM_001281786.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000354098.3 | SHMT1-003 | 1656 | 444aa | ENSP00000318805.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS11197 | J3KRZ5 P34896 Q9UMC9 | NM_148918.1 | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, |
| ENST00000582653.1 | SHMT1-009 | 879 | 167aa | ENSP00000462227.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | J3KRZ5 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000583780.1 | SHMT1-007 | 332 | 1aa | ENSP00000462041.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000580002.1 | SHMT1-006 | 1759 | 128aa | ENSP00000462043.1 | Nonsense mediated decay | J3KRK5 | - | - | |
| ENST00000582352.1 | SHMT1-010 | 2756 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000395684.1 | SHMT1-004 | 2652 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000579558.1 | SHMT1-008 | 1077 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - | |
| ENST00000395682.3 | SHMT1-005 | 570 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | - |
