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Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Paralogues
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- Gene tree
- Gene gain/loss tree
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Genetic Variation
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Gene: CCL20 ENSG00000115009

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Description

chemokine (C-C motif) ligand 20 [Source:HGNC Symbol;Acc:10619]

Gene Synonyms

CKb4, LARC, MIP-3-alpha, MIP-3a, MIP3A, SCYA20, ST38, exodus-1

Location

Chromosome 2: 228,678,558-228,682,272 forward strand.

GRCh37:CM000664.1

About this gene

This gene has 4 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000358813.4	CCL20-004	800	96aa	ENSP00000351671.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2469	P78556	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000409189.3	CCL20-001	831	95aa	ENSP00000386273.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46536	P78556	NM_004591.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000473642.1	CCL20-003	680	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489160.1	CCL20-002	673	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

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Summary

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