Transcript: ENST00000200639.4 LAMP2-001

Description

lysosomal-associated membrane protein 2 [Source:HGNC Symbol;Acc:6501]

Gene Synonyms

CD107b, LAMP-2, LAMPB, LGP110

Location

Chromosome X: 119,564,681-119,603,161 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 11176 variant alleles and maps to 422 oligo probes.

Gene

This transcript is a product of gene ENSG00000005893.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000434600.2	LAMP2-004	2089	411aa	ENSP00000408411.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48159	P13473	NM_002294.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000371335.4	LAMP2-002	4030	410aa	ENSP00000360386.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14600	B4E2S7 P13473	NM_013995.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000200639.4	LAMP2-001	1867	410aa	ENSP00000200639.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14599	P13473	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000540603.1	LAMP2-202	1625	363aa	ENSP00000440479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2S7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000538785.1	LAMP2-201	1433	300aa	ENSP00000440506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z2R9	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000486593.1	LAMP2-003	1069	258aa	ENSP00000431526.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,867 bps, Translation length: 410 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P13473

CCDS

This transcript is a member of the Human CCDS set: CCDS14599

Version

ENST00000200639.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000058099 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000200639.4 LAMP2-001

Summary