Transcript: ENST00000486593.1 LAMP2-003

Description

lysosomal-associated membrane protein 2 [Source:HGNC Symbol;Acc:6501]

Gene Synonyms

CD107b, LAMP-2, LAMPB, LGP110

Location

Chromosome X: 119,565,103-119,582,923 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 5367 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSG00000005893.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000371335.4	LAMP2-002	4030	410aa	ENSP00000360386.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14600	B4E2S7 P13473	NM_013995.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000434600.2	LAMP2-004	2089	411aa	ENSP00000408411.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48159	P13473	NM_002294.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000200639.4	LAMP2-001	1867	410aa	ENSP00000200639.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14599	P13473	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540603.1	LAMP2-202	1625	363aa	ENSP00000440479.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E2S7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538785.1	LAMP2-201	1433	300aa	ENSP00000440506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z2R9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000486593.1	LAMP2-003	1069	258aa	ENSP00000431526.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,069 bps, Translation length: 258 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000486593.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000058101 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000486593.1 LAMP2-003

Summary