Transcript: ENST00000597855.1 SPIB-007

Description

Spi-B transcription factor (Spi-1/PU.1 related) [Source:HGNC Symbol;Acc:11242]

Gene Synonyms

SPI-B

Location

Chromosome 19: 50,922,198-50,931,381 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 4512 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000269404.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000595883.1	SPIB-001	3791	262aa	ENSP00000471921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33080	Q01892	NM_003121.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000270632.7	SPIB-003	1443	177aa	ENSP00000270632.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59412	Q01892	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000596074.1	SPIB-002	847	77aa	ENSP00000470970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R037	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000439922.2	SPIB-201	847	171aa	ENSP00000391877.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58674	Q01892	NM_001243998.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000597855.1	SPIB-007	564	137aa	ENSP00000469023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0QXA8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594685.1	SPIB-006	391	127aa	ENSP00000472626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R2J9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000599923.1	SPIB-004	578	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000594188.1	SPIB-005	521	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 564 bps, Translation length: 137 residues

Version

ENST00000597855.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000464747 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000597855.1 SPIB-007

Summary