Transcript: ENST00000513582.1 PDCD6-003

Description

programmed cell death 6 [Source:HGNC Symbol;Acc:8765]

Gene Synonyms

ALG-2, ALG2, PEF1B

Location

Chromosome 5: 271,740-315,084 forward strand.

About this transcript

This transcript has 5 exons, is associated with 23459 variant alleles and maps to 414 oligo probes.

Gene

This transcript is a product of gene ENSG00000249915.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000509581.1	PDCD6-006	1156	55aa	ENSP00000422691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86W51	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264933.4	PDCD6-001	1135	191aa	ENSP00000264933.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3854	O75340 Q86W51	NM_013232.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507528.1	PDCD6-008	1088	189aa	ENSP00000423815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58940	O75340 Q86W51	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505221.1	PDCD6-011	672	69aa	ENSP00000422085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58941	O75340 Q86W51	NM_001267559.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507473.1	PDCD6-012	486	104aa	ENSP00000425370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9X3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505526.1	PDCD6-002	1484	39aa	ENSP00000424201.1	Nonsense mediated decay		D6RA21	-	-
ENST00000506909.1	PDCD6-014	458	73aa	ENSP00000426003.1	Nonsense mediated decay		E7EPW6 Q86W51	-	-
ENST00000511482.1	PDCD6-009	878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512466.1	PDCD6-007	3763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513582.1	PDCD6-003	3500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515587.1	PDCD6-005	855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 3,500 bps,

Version

ENST00000513582.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000367643 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000513582.1 PDCD6-003

Summary