Transcript: ENST00000264933.4 PDCD6-001

Description

programmed cell death 6 [Source:HGNC Symbol;Acc:8765]

Gene Synonyms

ALG-2, ALG2, PEF1B

Location

Chromosome 5: 271,736-315,089 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 16 domains and features, is associated with 23465 variant alleles and maps to 373 oligo probes.

Gene

This transcript is a product of gene ENSG00000249915.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000509581.1	PDCD6-006	1156	55aa	ENSP00000422691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q86W51	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264933.4	PDCD6-001	1135	191aa	ENSP00000264933.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3854	O75340 Q86W51	NM_013232.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507528.1	PDCD6-008	1088	189aa	ENSP00000423815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58940	O75340 Q86W51	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505221.1	PDCD6-011	672	69aa	ENSP00000422085.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58941	O75340 Q86W51	NM_001267559.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507473.1	PDCD6-012	486	104aa	ENSP00000425370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9X3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505526.1	PDCD6-002	1484	39aa	ENSP00000424201.1	Nonsense mediated decay		D6RA21	-	-
ENST00000506909.1	PDCD6-014	458	73aa	ENSP00000426003.1	Nonsense mediated decay		E7EPW6 Q86W51	-	-
ENST00000511482.1	PDCD6-009	878	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000512466.1	PDCD6-007	3763	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000513582.1	PDCD6-003	3500	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000515587.1	PDCD6-005	855	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,135 bps, Translation length: 191 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75340

CCDS

This transcript is a member of the Human CCDS set: CCDS3854

Version

ENST00000264933.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000206609 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000264933.4 PDCD6-001

Summary