Transcript: ENST00000482280.1 MSH5-019

Description

mutS homolog 5 [Source:HGNC Symbol;Acc:7328]

Gene Synonyms

G7, MUTSH5, NG23

Location

Chromosome 6: 31,707,782-31,714,108 forward strand.

About this transcript

This transcript has 9 exons, is associated with 3033 variant alleles and maps to 989 oligo probes.

Gene

This transcript is a product of gene ENSG00000204410.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000534153.4	MSH5-203	3986	851aa	ENSP00000431693.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZX3 O43196	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375755.3	MSH5-001	3094	834aa	ENSP00000364908.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4720	B4DZX3 O43196 Q5SSR2	NM_002441.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375742.3	MSH5-201	2823	851aa	ENSP00000364894.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZX3 O43196	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375750.3	MSH5-002	2775	834aa	ENSP00000364903.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4720	B4DZX3 O43196 Q5SSR2	NM_172166.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375703.3	MSH5-004	2708	835aa	ENSP00000364855.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34410	O43196 Q5SSR2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395853.1	MSH5-006	2704	508aa	ENSP00000379194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ABF0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375740.3	MSH5-005	2669	822aa	ENSP00000364892.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34409	O43196	NM_025259.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431848.2	MSH5-202	1879	533aa	ENSP00000416784.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZX3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450148.1	MSH5-011	1000	333aa	ENSP00000394971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ABE9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000425703.1	MSH5-008	694	194aa	ENSP00000402842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SSR2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000429846.1	MSH5-018	616	156aa	ENSP00000406849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ABF1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423982.2	MSH5-021	2706	637aa	ENSP00000406352.2	Nonsense mediated decay		H7C2J4 Q5SSR2	-	-
ENST00000463144.1	MSH5-010	2296	159aa	ENSP00000419648.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000484309.1	MSH5-017	857	166aa	ENSP00000420232.1	Nonsense mediated decay		H0YDS7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497269.1	MSH5-012	764	43aa	ENSP00000419131.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482280.1	MSH5-019	944	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468602.1	MSH5-013	637	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463094.1	MSH5-009	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468136.1	MSH5-022	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467319.1	MSH5-014	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494646.1	MSH5-023	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494458.1	MSH5-016	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 944 bps,

Version

ENST00000482280.1

Type

Processed transcript

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000355292 (version 1)

Favourite species

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Recent locations

Transcript: ENST00000482280.1 MSH5-019

Summary