Transcript: ENST00000468136.1 MSH5-022

Description

mutS homolog 5 [Source:HGNC Symbol;Acc:7328]

Gene Synonyms

G7, MUTSH5, NG23

Location

Chromosome 6: 31,721,060-31,727,278 forward strand.

About this transcript

This transcript has 7 exons, is associated with 1775 variant alleles and maps to 939 oligo probes.

Gene

This transcript is a product of gene ENSG00000204410.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000534153.4	MSH5-203	3986	851aa	ENSP00000431693.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZX3 O43196	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375755.3	MSH5-001	3094	834aa	ENSP00000364908.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4720	B4DZX3 O43196 Q5SSR2	NM_002441.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375742.3	MSH5-201	2823	851aa	ENSP00000364894.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZX3 O43196	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375750.3	MSH5-002	2775	834aa	ENSP00000364903.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4720	B4DZX3 O43196 Q5SSR2	NM_172166.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375703.3	MSH5-004	2708	835aa	ENSP00000364855.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34410	O43196 Q5SSR2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395853.1	MSH5-006	2704	508aa	ENSP00000379194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ABF0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000375740.3	MSH5-005	2669	822aa	ENSP00000364892.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34409	O43196	NM_025259.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000431848.2	MSH5-202	1879	533aa	ENSP00000416784.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DZX3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000450148.1	MSH5-011	1000	333aa	ENSP00000394971.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ABE9	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000425703.1	MSH5-008	694	194aa	ENSP00000402842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SSR2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000429846.1	MSH5-018	616	156aa	ENSP00000406849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2ABF1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423982.2	MSH5-021	2706	637aa	ENSP00000406352.2	Nonsense mediated decay		H7C2J4 Q5SSR2	-	-
ENST00000463144.1	MSH5-010	2296	159aa	ENSP00000419648.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000484309.1	MSH5-017	857	166aa	ENSP00000420232.1	Nonsense mediated decay		H0YDS7	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000497269.1	MSH5-012	764	43aa	ENSP00000419131.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000482280.1	MSH5-019	944	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468602.1	MSH5-013	637	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000463094.1	MSH5-009	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468136.1	MSH5-022	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000467319.1	MSH5-014	688	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494646.1	MSH5-023	528	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494458.1	MSH5-016	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 690 bps,

Version

ENST00000468136.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355295 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000468136.1 MSH5-022

Summary