Transcript: ENST00000361813.5 SMG5-001

Description

SMG5 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:24644]

Gene Synonyms

EST1B, KIAA1089, LPTS-RP1, LPTSRP1, RP11-54H19.7, SMG-5

Location

About this transcript

This transcript has 22 exons, is annotated with 16 domains and features, is associated with 15699 variant alleles and maps to 878 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361813.5	SMG5-001	4559	1016aa	ENSP00000355261.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1137	Q9UPR3	NM_015327.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368267.5	SMG5-201	1274	374aa	ENSP00000357250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489907.2	SMG5-008	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476954.1	SMG5-005	1161	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473643.1	SMG5-004	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468993.1	SMG5-003	345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 4,559 bps, Translation length: 1,016 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UPR3

CCDS

This transcript is a member of the Human CCDS set: CCDS1137

Version

ENST00000361813.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000046308 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.