Transcript: ENST00000473643.1 SMG5-004

Description

SMG5 nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:24644]

Gene Synonyms

EST1B, KIAA1089, LPTS-RP1, LPTSRP1, RP11-54H19.7, SMG-5

Location

About this transcript

This transcript has 2 exons, is associated with 651 variant alleles and maps to 141 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361813.5	SMG5-001	4559	1016aa	ENSP00000355261.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1137	Q9UPR3	NM_015327.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000368267.5	SMG5-201	1274	374aa	ENSP00000357250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5SZX1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000489907.2	SMG5-008	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476954.1	SMG5-005	1161	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000473643.1	SMG5-004	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468993.1	SMG5-003	345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 541 bps,

Version

ENST00000473643.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000046311 (version 1)