Transcript: ENST00000418600.2 SYNGAP1-001

Description

synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:11497]

Gene Synonyms

KIAA1938, MRD5, RASA1, RASA5, SYNGAP

Location

Chromosome 6: 33,387,941-33,421,466 forward strand.

About this transcript

This transcript has 19 exons, is annotated with 30 domains and features, is associated with 14380 variant alleles and maps to 1155 oligo probes.

Gene

This transcript is a product of gene ENSG00000197283.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000418600.2	SYNGAP1-001	5916	1343aa	ENSP00000403636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34434	Q96PV0	NM_006772.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428982.2	SYNGAP1-003	4339	1284aa	ENSP00000412475.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96PV0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000293748.5	SYNGAP1-201	4095	1299aa	ENSP00000293748.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96PV0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449372.2	SYNGAP1-009	3847	1279aa	ENSP00000416519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZCA0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000496374.1	SYNGAP1-004	4556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486399.1	SYNGAP1-007	479	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495633.1	SYNGAP1-005	260	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479510.1	SYNGAP1-002	2061	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470232.1	SYNGAP1-008	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 5,916 bps, Translation length: 1,343 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PV0

CCDS

This transcript is a member of the Human CCDS set: CCDS34434

Version

ENST00000418600.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000076151 (version 4)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000418600.2 SYNGAP1-001

Summary