Transcript: ENST00000479510.1 SYNGAP1-002

Description

synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:11497]

Gene Synonyms

KIAA1938, MRD5, RASA1, RASA5, SYNGAP

Location

Chromosome 6: 33,387,847-33,406,886 forward strand.

About this transcript

This transcript has 10 exons, is associated with 8067 variant alleles and maps to 520 oligo probes.

Gene

This transcript is a product of gene ENSG00000197283.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000418600.2	SYNGAP1-001	5916	1343aa	ENSP00000403636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34434	Q96PV0	NM_006772.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000428982.2	SYNGAP1-003	4339	1284aa	ENSP00000412475.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96PV0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000293748.5	SYNGAP1-201	4095	1299aa	ENSP00000293748.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q96PV0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449372.2	SYNGAP1-009	3847	1279aa	ENSP00000416519.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZCA0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000496374.1	SYNGAP1-004	4556	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000486399.1	SYNGAP1-007	479	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495633.1	SYNGAP1-005	260	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479510.1	SYNGAP1-002	2061	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470232.1	SYNGAP1-008	394	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 2,061 bps,

Version

ENST00000479510.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000258900 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000479510.1 SYNGAP1-002

Summary