Transcript: ENST00000399132.1 COL25A1-001

Description

collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:18603]

Gene Synonyms

AMY, CLAC, CLAC-P, CLACP

Location

Chromosome 4: 109,734,855-110,223,799 reverse strand.

About this transcript

This transcript has 38 exons, is annotated with 20 domains and features, is associated with 199120 variant alleles and maps to 717 oligo probes.

Gene

This transcript is a product of gene ENSG00000188517.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399132.1	COL25A1-001	2724	654aa	ENSP00000382083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43258	D6R8Y2 Q9BXS0	NM_198721.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000399126.1	COL25A1-002	2674	642aa	ENSP00000382077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43259	D6R8Y2 Q4W5I4 Q9BXS0	NM_032518.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000399127.1	COL25A1-003	2500	645aa	ENSP00000382078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58922	A8MWQ5 D6R8Y2	NM_001256074.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000505591.1	COL25A1-005	428	70aa	ENSP00000422266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R8Y2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512961.1	COL25A1-007	316	29aa	ENSP00000426841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494183.1	COL25A1-004	4630	496aa	ENSP00000437131.1	Nonsense mediated decay		D6R8Y2 E9PNV9	-	-
ENST00000505377.1	COL25A1-006	448	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 38, Coding exons: 37, Transcript length: 2,724 bps, Translation length: 654 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BXS0

CCDS

This transcript is a member of the Human CCDS set: CCDS43258

Version

ENST00000399132.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000315938 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000399132.1 COL25A1-001

Summary