Transcript: ENST00000399127.1 COL25A1-003

Description

collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:18603]

Gene Synonyms

AMY, CLAC, CLAC-P, CLACP

Location

Chromosome 4: 109,745,032-110,223,523 reverse strand.

About this transcript

This transcript has 33 exons, is annotated with 19 domains and features, is associated with 194994 variant alleles and maps to 707 oligo probes.

Gene

This transcript is a product of gene ENSG00000188517.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000399132.1	COL25A1-001	2724	654aa	ENSP00000382083.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43258	D6R8Y2 Q9BXS0	NM_198721.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399126.1	COL25A1-002	2674	642aa	ENSP00000382077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS43259	D6R8Y2 Q4W5I4 Q9BXS0	NM_032518.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000399127.1	COL25A1-003	2500	645aa	ENSP00000382078.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58922	A8MWQ5 D6R8Y2	NM_001256074.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505591.1	COL25A1-005	428	70aa	ENSP00000422266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6R8Y2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000512961.1	COL25A1-007	316	29aa	ENSP00000426841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000494183.1	COL25A1-004	4630	496aa	ENSP00000437131.1	Nonsense mediated decay		D6R8Y2 E9PNV9	-	-
ENST00000505377.1	COL25A1-006	448	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 33, Coding exons: 33, Transcript length: 2,500 bps, Translation length: 645 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS58922

Version

ENST00000399127.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000315940 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000399127.1 COL25A1-003

Summary