Transcript: ENST00000466223.1 AGRN-005

Description

agrin [Source:HGNC Symbol;Acc:329]

Gene Synonyms

AGRIN

Location

Chromosome 1: 982,581-983,245 forward strand.

About this transcript

This transcript has 3 exons, is associated with 526 variant alleles and maps to 135 oligo probes.

Gene

This transcript is a product of gene ENSG00000188157.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379370.2	AGRN-001	7323	2045aa	ENSP00000368678.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30551	O00468 Q5XG79	NM_198576.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419249.1	AGRN-009	813	271aa	ENSP00000400771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000477585.1	AGRN-002	707	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461111.1	AGRN-008	3385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469403.1	AGRN-003	899	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492947.1	AGRN-007	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479707.1	AGRN-004	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466223.1	AGRN-005	459	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478677.1	AGRN-006	276	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 459 bps,

Version

ENST00000466223.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000097994 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000466223.1 AGRN-005

Summary