Transcript: ENST00000379370.2 AGRN-001

Description

agrin [Source:HGNC Symbol;Acc:329]

Gene Synonyms

AGRIN

Location

Chromosome 1: 955,503-991,496 forward strand.

About this transcript

This transcript has 36 exons, is annotated with 135 domains and features, is associated with 24518 variant alleles and maps to 1134 oligo probes.

Gene

This transcript is a product of gene ENSG00000188157.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000379370.2	AGRN-001	7323	2045aa	ENSP00000368678.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30551	O00468 Q5XG79	NM_198576.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000419249.1	AGRN-009	813	271aa	ENSP00000400771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000477585.1	AGRN-002	707	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461111.1	AGRN-008	3385	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000469403.1	AGRN-003	899	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492947.1	AGRN-007	690	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000479707.1	AGRN-004	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466223.1	AGRN-005	459	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000478677.1	AGRN-006	276	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 36, Coding exons: 36, Transcript length: 7,323 bps, Translation length: 2,045 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00468

CCDS

This transcript is a member of the Human CCDS set: CCDS30551

Version

ENST00000379370.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000097990 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000379370.2 AGRN-001

Summary