Transcript: ENST00000342740.5 LRRC16B-001

Description

leucine rich repeat containing 16B [Source:HGNC Symbol;Acc:20272]

Gene Synonyms

BC008134, C14orf121, CARMIL3, crml-1

Location

About this transcript

This transcript has 40 exons, is annotated with 20 domains and features, is associated with 8871 variant alleles and maps to 965 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000342740.5	LRRC16B-001	4597	1372aa	ENSP00000340467.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32054	Q8ND23	NM_138360.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334420.7	LRRC16B-201	4450	425aa	ENSP00000334701.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8ND23	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559694.1	LRRC16B-003	4319	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560349.1	LRRC16B-002	2664	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561354.1	LRRC16B-004	564	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 40, Coding exons: 40, Transcript length: 4,597 bps, Translation length: 1,372 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8ND23

CCDS

This transcript is a member of the Human CCDS set: CCDS32054

Version

ENST00000342740.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000416527 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.