Transcript: ENST00000335500.4 GPATCH8-003

Description

G patch domain containing 8 [Source:HGNC Symbol;Acc:29066]

Gene Synonyms

GPATC8, KIAA0553

Location

Chromosome 17: 42,472,652-42,543,303 reverse strand.

About this transcript

This transcript has 7 exons, is associated with 31458 variant alleles and maps to 556 oligo probes.

Gene

This transcript is a product of gene ENSG00000186566.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000591680.1	GPATCH8-001	4692	1502aa	ENSP00000467556.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32666	Q9UKJ3	NM_001002909.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000434000.1	GPATCH8-201	4710	1424aa	ENSP00000395016.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UKJ3	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000585614.1	GPATCH8-010	686	221aa	ENSP00000465781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKU0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000592154.1	GPATCH8-004	650	46aa	ENSP00000467873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQK8	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000588554.1	GPATCH8-005	565	42aa	ENSP00000465921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL52	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000587228.1	GPATCH8-002	4713	43aa	ENSP00000468719.1	Nonsense mediated decay		Q9UKJ3	-	-
ENST00000590041.1	GPATCH8-006	829	46aa	ENSP00000467233.1	Nonsense mediated decay		K7EQK8	-	-
ENST00000592746.1	GPATCH8-008	457	46aa	ENSP00000464815.1	Nonsense mediated decay		K7EQK8	-	-
ENST00000586037.1	GPATCH8-009	345	46aa	ENSP00000468821.1	Nonsense mediated decay		K7EQK8	-	-
ENST00000586265.1	GPATCH8-007	484	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000335500.4	GPATCH8-003	8109	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 8,109 bps,

Version

ENST00000335500.4

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000457796 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000335500.4 GPATCH8-003

Summary